“벡터 네이밍 규칙”에 설명한 대로, VectorBuilder의 유전자 기반 ORF 데이터베이스에서 검색하면 생물종 약어는 ORF명에 포함되어 있다. 이러한 약어는 아래 표에 열거되어 있다
Popular species
| Common name |
Scientific name |
Taxonomy ID |
VectorBuilder abbreviation |
| Human |
Homo sapiens |
9606 |
h |
| Mouse |
Mus musculus |
10090 |
m |
| Rat |
Rattus norvegicus |
10116 |
r |
| African clawed frog |
Xenopus laevis |
8355 |
xla_ |
| Zebrafish |
Danio rerio |
7955 |
dre_ |
| Fruit fly |
Drosophila melanogaster |
7227 |
dme_ |
| N/A |
Caenorhabditis elegans |
6239 |
cel_ |
| Thale cress |
Arabidopsis thaliana |
3702 |
ath_ |
| Baker's yeast |
Saccharomyces cerevisiae S288c |
559292 |
sce_ |
| E. coli |
Escherichia coli str. K-12 substr. MG1655 |
511145 |
eco_ |
Mammals
| Common name |
Scientific name |
Taxonomy ID |
VectorBuilder abbreviation |
| Bonobo |
Pan paniscus |
9597 |
bn |
| Cat |
Felis catus |
9685 |
ct |
| Chimpanzee |
Pan troglodytes |
9598 |
ch |
| Cow |
Bos taurus |
9913 |
cw |
| Crab-eating macaque |
Macaca fascicularis |
9541 |
cm |
| Dog |
Canis lupus familiaris |
9615 |
dg |
| Gibbon |
Nomascus leucogenys |
61853 |
gi |
| Goat |
Capra hircus |
9925 |
gt |
| Guinea pig |
Cavia porcellus |
10141 |
gp |
| Hamster |
Mesocricetus auratus |
10036 |
ha |
| Horse |
Equus caballus |
9796 |
ho |
| Human |
Homo sapiens |
9606 |
h |
| Marmoset |
Callithrix jacchus |
9483 |
cja_ |
| Mouse |
Mus musculus |
10090 |
m |
| Mouse lemur |
Microcebus murinus |
30608 |
ml |
| Opossum |
Monodelphis domestica |
13616 |
mdo_ |
| Orangutan |
Pongo abelii |
9601 |
or |
| Panda |
Ailuropoda melanoleuca |
9646 |
pd |
| Pig |
Sus scrofa |
9823 |
pg |
| Platypus |
Ornithorhynchus anatinus |
9258 |
oan_ |
| Rabbit |
Oryctolagus cuniculus |
9986 |
ra |
| Rat |
Rattus norvegicus |
10116 |
r |
| Rhesus macaque |
Macaca mulatta |
9544 |
rm |
| Sheep |
Ovis aries |
9940 |
sh |
| Western gorilla |
|
9593 |
go |
Birds
| Common name |
Scientific name |
Taxonomy ID |
VectorBuilder abbreviation |
| Chicken |
Gallus gallus |
9031 |
gga_ |
| Zebra finch |
Taeniopygia guttata |
59729 |
tgu_ |
Reptiles
| Common name |
Scientific name |
Taxonomy ID |
VectorBuilder abbreviation |
| Anole lizard |
Anolis carolinensis |
28377 |
aca_ |
Amphibians
| Common name |
Scientific name |
Taxonomy ID |
VectorBuilder abbreviation |
| African clawed frog |
Xenopus laevis |
8355 |
xla_ |
| Western clawed frog |
Xenopus tropicalis |
8364 |
xtr_ |
Fish
| Common name |
Scientific name |
Taxonomy ID |
VectorBuilder abbreviation |
| Cave fish |
Astyanax mexicanus |
7994 |
ame_ |
| Fugu |
Takifugu rubripes |
31033 |
tru_ |
| Medaka |
Oryzias latipes |
8090 |
ola_ |
| Mummichog |
Fundulus heteroclitus |
8078 |
fhe_ |
| Turquoise killifish |
Nothobranchius furzeri |
105023 |
nfu_ |
| Zebrafish |
Danio rerio |
7955 |
dre_ |
Tunicates
| Common name |
Scientific name |
Taxonomy ID |
VectorBuilder abbreviation |
| Vase tunicate |
Ciona intestinalis |
7719 |
cin_ |
Insects
| Common name |
Scientific name |
Taxonomy ID |
VectorBuilder abbreviation |
| Fruit fly |
Drosophila melanogaster |
7227 |
dme_ |
| Mosquito |
Anopheles gambiae str. PEST |
180454 |
aga_ |
| Silk worm |
Bombyx mori |
7091 |
bmo_ |
Nematodes
| Common name |
Scientific name |
Taxonomy ID |
VectorBuilder abbreviation |
| N/A |
Caenorhabditis briggsae |
6238 |
cbr_ |
| N/A |
Caenorhabditis elegans |
6239 |
cel_ |
Hydrozoa
| Common name |
Scientific name |
Taxonomy ID |
VectorBuilder abbreviation |
| Fresh-water polyp |
Hydra vulgaris |
6087 |
hvu_ |
Protozoa
| Common name |
Scientific name |
Taxonomy ID |
VectorBuilder abbreviation |
| Amoeba |
Dictyostelium discoideum AX4 |
352472 |
ddi_ |
| N/A |
Plasmodium falciparum 3D7 |
36329 |
pfa_ |
| N/A |
Tetrahymena thermophila SB210 |
312017 |
tth_ |
Plants
| Common name |
Scientific name |
Taxonomy ID |
VectorBuilder abbreviation |
| Maize |
Zea mays |
4577 |
zma_ |
| Potato |
Solanum tuberosum |
4113 |
stu_ |
| Rice |
Oryza sativa |
39947 |
osa_ |
| Soybean |
Glycine max |
3847 |
gma_ |
| Spreading earthmoss |
Physcomitrella patens |
3218 |
ppa_ |
| Thale cress |
Arabidopsis thaliana |
3702 |
ath_ |
| Tobacco |
Nicotiana tabacum |
4097 |
nta_ |
| Tomato |
Solanum lycopersicum |
4081 |
sly_ |
| Wheat |
Triticum aestivum |
4565 |
tae_ |
Algae
| Common name |
Scientific name |
Taxonomy ID |
VectorBuilder abbreviation |
| N/A |
Emiliania huxleyi CCMP1516 |
280463 |
ehu_ |
| Green alga |
Chlamydomonas reinhardtii |
3055 |
cre_ |
Fungi/yeast
| Common name |
Scientific name |
Taxonomy ID |
VectorBuilder abbreviation |
| Baker's yeast |
Saccharomyces cerevisiae S288c |
559292 |
sce_ |
| N/A |
Candida albicans SC5314 |
237561 |
cal_ |
| Fission yeast |
Schizosaccharomyces pombe |
4896 |
spo_ |
| N/A |
Neurospora crassa OR74A |
367110 |
ncr_ |
Bacteria
| Common name |
Scientific name |
Taxonomy ID |
VectorBuilder abbreviation |
| N/A |
Bacillus subtilis subsp. subtilis str. 168 |
224308 |
bsu_ |
| N/A |
Escherichia coli str. K-12 substr. MG1655 |
511145 |
eco_ |
| N/A |
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 |
390333 |
lde_ |
| N/A |
Rhizobium leguminosarum bv. trifolii WSM2304 |
395492 |
rle_ |
| N/A |
Streptococcus thermophilus JIM 8232 |
1051074 |
sth_ |
| N/A |
Streptomyces coelicolor A3(2) |
100226 |
sco_ |
